A few minutes into additional time, Ayunga played the ball to Stockton who would have been through on goal, but the striker got the ball caught under his feet.
In the final stages of the game, Bolton got a leveller when substitute Amadou Bakayoko turned the ball into the net from close-range.
Full-time: Morecambe 1-1 Bolton Wanderers
Morecambe: Smith, R McLaughlin, Leigh, O’Connor, Bedeau, Diagouraga, Stockton, Ayunga, Phillips (85’ Fane), S McLaughlin, Gnahoua (90+8’ Connolly)
Subs not used: Da Silva Mendes, Obika, Cooney, McCalmont, Bennett
Goals: Stockton 73’
Bookings: Smith 86’
Red cards: None.
Bolton Wanderers: Trafford, John, Williams, Santos, Johnston, Charles (78’ Bakayoko), Fossey, Aimson, Morley, Afolayan (67’Dempsey), Lee (46’ Böðvarsson)
Subs not used: Dixon, Bakayoko, Sadlier, Thomason, John-Baptiste
Goals: Bakayoko 90+5’
Bookings: Johnston 44’